I, personally am a strong christian.
I also, however, believe the church is in a wrong in the way they acted.
If they had truly been in prayer like they had said, they would have realized that this was the answer to their prayers that they were looking for. Christianity teaches to cross social boundaries and to accept when good is given to you. Although the pastor said he didn't make a political decision, he did. Had he not been looking at the politics of the issue, he would have accepted the donations and accepted them for that.
According to the christian religion, god made everything on earth with a purpose, including marijuana. Although people abuse it for its effects just to get a high, It does have very good medicinal and structural uses, like in hemp, where it can be used without being abused. In my opinion, if they had been looking truly just at this, they would realize the situation, and they once again would not be looking down upon this organization.
Also, if you read the bible at all, Jesus, who is supposed to be the focus of the christian religion, often accepts help from those who the public would often look upon as taboo to be accepting help from. Just one example is the parable of the good Samaritan (which is pretty widely known even outside the christian religion). If they had truly been looking towards their religion and not towards politics, they once again would have realized this and they would have accepted the donations.
The only reason i could see this going a different way would be if the organization was not promoting the use of medicinal marijuana in a good way, thus making the church disagree with its ethical points, and thus turning down the donations.
Otherwise, this is bullshit, and the leaders of the church were not looking at the donation from the point of view they should have been looking at it from, and were just thinking about themselves. Thus the whole :we prayed about it" thing means jack squat and they are only doing it for their own selfish reasons.
And thats all i have to say about that...
None.